Files
ragflow/deepdoc/parser/mineru_parser.py
Stephen Hu 09dd786674 Fix:KeyError: 'table_body' of mineru parser (#10773)
### What problem does this PR solve?
https://github.com/infiniflow/ragflow/issues/10769

### Type of change

- [x] Bug Fix (non-breaking change which fixes an issue)
2025-10-31 10:07:56 +08:00

502 lines
20 KiB
Python
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#
# Copyright 2025 The InfiniFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
import json
import logging
import platform
import re
import subprocess
import sys
import tempfile
import threading
import time
from io import BytesIO
from os import PathLike
from pathlib import Path
from queue import Empty, Queue
from typing import Any, Callable, Optional
import requests
import os
import zipfile
import numpy as np
import pdfplumber
from PIL import Image
from strenum import StrEnum
from deepdoc.parser.pdf_parser import RAGFlowPdfParser
LOCK_KEY_pdfplumber = "global_shared_lock_pdfplumber"
if LOCK_KEY_pdfplumber not in sys.modules:
sys.modules[LOCK_KEY_pdfplumber] = threading.Lock()
class MinerUContentType(StrEnum):
IMAGE = "image"
TABLE = "table"
TEXT = "text"
EQUATION = "equation"
CODE = "code"
LIST = "list"
DISCARDED = "discarded"
class MinerUParser(RAGFlowPdfParser):
def __init__(self, mineru_path: str = "mineru", mineru_api: str = "http://host.docker.internal:9987"):
self.mineru_path = Path(mineru_path)
self.mineru_api = mineru_api.rstrip('/')
self.using_api = False
self.logger = logging.getLogger(self.__class__.__name__)
def _extract_zip_no_root(self, zip_path, extract_to, root_dir):
with zipfile.ZipFile(zip_path, 'r') as zip_ref:
if not root_dir:
files = zip_ref.namelist()
if files and files[0].endswith('/'):
root_dir = files[0]
else:
root_dir = None
if not root_dir or not root_dir.endswith('/'):
self.logger.info(f"[MinerU] No root directory found, extracting all...fff{root_dir}")
zip_ref.extractall(extract_to)
return
root_len = len(root_dir)
for member in zip_ref.infolist():
filename = member.filename
if filename == root_dir:
self.logger.info("[MinerU] Ignore root folder...")
continue
path = filename
if path.startswith(root_dir):
path = path[root_len:]
full_path = os.path.join(extract_to, path)
if member.is_dir():
os.makedirs(full_path, exist_ok=True)
else:
os.makedirs(os.path.dirname(full_path), exist_ok=True)
with open(full_path, 'wb') as f:
f.write(zip_ref.read(filename))
def _is_http_endpoint_valid(self, url, timeout=5):
try:
response = requests.head(url, timeout=timeout, allow_redirects=True)
return response.status_code in [200, 301, 302, 307, 308]
except Exception:
return False
def check_installation(self) -> bool:
subprocess_kwargs = {
"capture_output": True,
"text": True,
"check": True,
"encoding": "utf-8",
"errors": "ignore",
}
if platform.system() == "Windows":
subprocess_kwargs["creationflags"] = getattr(subprocess, "CREATE_NO_WINDOW", 0)
try:
result = subprocess.run([str(self.mineru_path), "--version"], **subprocess_kwargs)
version_info = result.stdout.strip()
if version_info:
logging.info(f"[MinerU] Detected version: {version_info}")
else:
logging.info("[MinerU] Detected MinerU, but version info is empty.")
return True
except subprocess.CalledProcessError as e:
logging.warning(f"[MinerU] Execution failed (exit code {e.returncode}).")
except FileNotFoundError:
logging.warning("[MinerU] MinerU not found. Please install it via: pip install -U 'mineru[core]'")
except Exception as e:
logging.error(f"[MinerU] Unexpected error during installation check: {e}")
try:
if self.mineru_api:
# check openapi.json
openapi_exists = self._is_http_endpoint_valid(self.mineru_api + "/openapi.json")
logging.info(f"[MinerU] Detected {self.mineru_api}/openapi.json: {openapi_exists}")
self.using_api = openapi_exists
return openapi_exists
else:
logging.info("[MinerU] api not exists.")
except Exception as e:
logging.error(f"[MinerU] Unexpected error during api check: {e}")
return False
def _run_mineru(self, input_path: Path, output_dir: Path, method: str = "auto", backend: str = "pipeline", lang: Optional[str] = None, callback: Optional[Callable] = None):
if self.using_api:
self._run_mineru_api(input_path, output_dir, method, backend, lang, callback)
else:
self._run_mineru_executable(input_path, output_dir, method, backend, lang, callback)
def _run_mineru_api(self, input_path: Path, output_dir: Path, method: str = "auto", backend: str = "pipeline", lang: Optional[str] = None, callback: Optional[Callable] = None):
OUTPUT_ZIP_PATH = os.path.join(str(output_dir), "output.zip")
pdf_file_path = str(input_path)
if not os.path.exists(pdf_file_path):
raise RuntimeError(f"[MinerU] PDF file not exists: {pdf_file_path}")
pdf_file_name = Path(pdf_file_path).stem.strip()
output_path = os.path.join(str(output_dir), pdf_file_name, method)
os.makedirs(output_path, exist_ok=True)
files = {
"files": (pdf_file_name + ".pdf", open(pdf_file_path, "rb"), "application/pdf")
}
data = {
"output_dir": "./output",
"lang_list": lang,
"backend": backend,
"parse_method": method,
"formula_enable": True,
"table_enable": True,
"server_url": None,
"return_md": True,
"return_middle_json": True,
"return_model_output": True,
"return_content_list": True,
"return_images": True,
"response_format_zip": True,
"start_page_id": 0,
"end_page_id": 99999
}
headers = {
"Accept": "application/json"
}
try:
self.logger.info(f"[MinerU] invoke api: {self.mineru_api}/file_parse")
if callback:
callback(0.20, f"[MinerU] invoke api: {self.mineru_api}/file_parse")
response = requests.post(
url=f"{self.mineru_api}/file_parse",
files=files,
data=data,
headers=headers,
timeout=1800
)
response.raise_for_status()
if response.headers.get("Content-Type") == "application/zip":
self.logger.info(f"[MinerU] zip file returned, saving to {OUTPUT_ZIP_PATH}...")
if callback:
callback(0.30, f"[MinerU] zip file returned, saving to {OUTPUT_ZIP_PATH}...")
with open(OUTPUT_ZIP_PATH, "wb") as f:
f.write(response.content)
self.logger.info(f"[MinerU] Unzip to {output_path}...")
self._extract_zip_no_root(OUTPUT_ZIP_PATH, output_path, pdf_file_name + "/")
if callback:
callback(0.40, f"[MinerU] Unzip to {output_path}...")
else:
self.logger.warning("[MinerU] not zip returned from api%s " % response.headers.get("Content-Type"))
except Exception as e:
raise RuntimeError(f"[MinerU] api failed with exception {e}")
self.logger.info("[MinerU] Api completed successfully.")
def _run_mineru_executable(self, input_path: Path, output_dir: Path, method: str = "auto", backend: str = "pipeline", lang: Optional[str] = None, callback: Optional[Callable] = None):
cmd = [str(self.mineru_path), "-p", str(input_path), "-o", str(output_dir), "-m", method]
if backend:
cmd.extend(["-b", backend])
if lang:
cmd.extend(["-l", lang])
self.logger.info(f"[MinerU] Running command: {' '.join(cmd)}")
subprocess_kwargs = {
"stdout": subprocess.PIPE,
"stderr": subprocess.PIPE,
"text": True,
"encoding": "utf-8",
"errors": "ignore",
"bufsize": 1,
}
if platform.system() == "Windows":
subprocess_kwargs["creationflags"] = getattr(subprocess, "CREATE_NO_WINDOW", 0)
process = subprocess.Popen(cmd, **subprocess_kwargs)
stdout_queue, stderr_queue = Queue(), Queue()
def enqueue_output(pipe, queue, prefix):
for line in iter(pipe.readline, ""):
if line.strip():
queue.put((prefix, line.strip()))
pipe.close()
threading.Thread(target=enqueue_output, args=(process.stdout, stdout_queue, "STDOUT"), daemon=True).start()
threading.Thread(target=enqueue_output, args=(process.stderr, stderr_queue, "STDERR"), daemon=True).start()
while process.poll() is None:
for q in (stdout_queue, stderr_queue):
try:
while True:
prefix, line = q.get_nowait()
if prefix == "STDOUT":
self.logger.info(f"[MinerU] {line}")
else:
self.logger.warning(f"[MinerU] {line}")
except Empty:
pass
time.sleep(0.1)
return_code = process.wait()
if return_code != 0:
raise RuntimeError(f"[MinerU] Process failed with exit code {return_code}")
self.logger.info("[MinerU] Command completed successfully.")
def __images__(self, fnm, zoomin: int = 1, page_from=0, page_to=600, callback=None):
self.page_from = page_from
self.page_to = page_to
try:
with pdfplumber.open(fnm) if isinstance(fnm, (str, PathLike)) else pdfplumber.open(BytesIO(fnm)) as pdf:
self.pdf = pdf
self.page_images = [p.to_image(resolution=72 * zoomin, antialias=True).original for _, p in enumerate(self.pdf.pages[page_from:page_to])]
except Exception as e:
self.page_images = None
self.total_page = 0
logging.exception(e)
def _line_tag(self, bx):
pn = [bx["page_idx"] + 1]
positions = bx["bbox"]
x0, top, x1, bott = positions
if hasattr(self, "page_images") and self.page_images and len(self.page_images) > bx["page_idx"]:
page_width, page_height = self.page_images[bx["page_idx"]].size
x0 = (x0 / 1000.0) * page_width
x1 = (x1 / 1000.0) * page_width
top = (top / 1000.0) * page_height
bott = (bott / 1000.0) * page_height
return "@@{}\t{:.1f}\t{:.1f}\t{:.1f}\t{:.1f}##".format("-".join([str(p) for p in pn]), x0, x1, top, bott)
def crop(self, text, ZM=1, need_position=False):
imgs = []
poss = self.extract_positions(text)
if not poss:
if need_position:
return None, None
return
max_width = max(np.max([right - left for (_, left, right, _, _) in poss]), 6)
GAP = 6
pos = poss[0]
poss.insert(0, ([pos[0][0]], pos[1], pos[2], max(0, pos[3] - 120), max(pos[3] - GAP, 0)))
pos = poss[-1]
poss.append(([pos[0][-1]], pos[1], pos[2], min(self.page_images[pos[0][-1]].size[1], pos[4] + GAP), min(self.page_images[pos[0][-1]].size[1], pos[4] + 120)))
positions = []
for ii, (pns, left, right, top, bottom) in enumerate(poss):
right = left + max_width
if bottom <= top:
bottom = top + 2
for pn in pns[1:]:
bottom += self.page_images[pn - 1].size[1]
img0 = self.page_images[pns[0]]
x0, y0, x1, y1 = int(left), int(top), int(right), int(min(bottom, img0.size[1]))
crop0 = img0.crop((x0, y0, x1, y1))
imgs.append(crop0)
if 0 < ii < len(poss) - 1:
positions.append((pns[0] + self.page_from, x0, x1, y0, y1))
bottom -= img0.size[1]
for pn in pns[1:]:
page = self.page_images[pn]
x0, y0, x1, y1 = int(left), 0, int(right), int(min(bottom, page.size[1]))
cimgp = page.crop((x0, y0, x1, y1))
imgs.append(cimgp)
if 0 < ii < len(poss) - 1:
positions.append((pn + self.page_from, x0, x1, y0, y1))
bottom -= page.size[1]
if not imgs:
if need_position:
return None, None
return
height = 0
for img in imgs:
height += img.size[1] + GAP
height = int(height)
width = int(np.max([i.size[0] for i in imgs]))
pic = Image.new("RGB", (width, height), (245, 245, 245))
height = 0
for ii, img in enumerate(imgs):
if ii == 0 or ii + 1 == len(imgs):
img = img.convert("RGBA")
overlay = Image.new("RGBA", img.size, (0, 0, 0, 0))
overlay.putalpha(128)
img = Image.alpha_composite(img, overlay).convert("RGB")
pic.paste(img, (0, int(height)))
height += img.size[1] + GAP
if need_position:
return pic, positions
return pic
@staticmethod
def extract_positions(txt: str):
poss = []
for tag in re.findall(r"@@[0-9-]+\t[0-9.\t]+##", txt):
pn, left, right, top, bottom = tag.strip("#").strip("@").split("\t")
left, right, top, bottom = float(left), float(right), float(top), float(bottom)
poss.append(([int(p) - 1 for p in pn.split("-")], left, right, top, bottom))
return poss
def _read_output(self, output_dir: Path, file_stem: str, method: str = "auto", backend: str = "pipeline") -> list[dict[str, Any]]:
subdir = output_dir / file_stem / method
if backend.startswith("vlm-"):
subdir = output_dir / file_stem / "vlm"
json_file = subdir / f"{file_stem}_content_list.json"
if not json_file.exists():
raise FileNotFoundError(f"[MinerU] Missing output file: {json_file}")
with open(json_file, "r", encoding="utf-8") as f:
data = json.load(f)
for item in data:
for key in ("img_path", "table_img_path", "equation_img_path"):
if key in item and item[key]:
item[key] = str((subdir / item[key]).resolve())
return data
def _transfer_to_sections(self, outputs: list[dict[str, Any]]):
sections = []
for output in outputs:
match output["type"]:
case MinerUContentType.TEXT:
section = output["text"]
case MinerUContentType.TABLE:
section = output.get("table_body", "") + "\n".join(output.get("table_caption", [])) + "\n".join(output.get("table_footnote", []))
if not section.strip():
section = "FAILED TO PARSE TABLE"
case MinerUContentType.IMAGE:
section = "".join(output["image_caption"]) + "\n" + "".join(output["image_footnote"])
case MinerUContentType.EQUATION:
section = output["text"]
case MinerUContentType.CODE:
section = output["code_body"] + "\n".join(output.get("code_caption", []))
case MinerUContentType.LIST:
section = "\n".join(output.get("list_items", []))
case MinerUContentType.DISCARDED:
pass
if section:
sections.append((section, self._line_tag(output)))
return sections
def _transfer_to_tables(self, outputs: list[dict[str, Any]]):
return []
def parse_pdf(
self,
filepath: str | PathLike[str],
binary: BytesIO | bytes,
callback: Optional[Callable] = None,
*,
output_dir: Optional[str] = None,
backend: str = "pipeline",
lang: Optional[str] = None,
method: str = "auto",
delete_output: bool = True,
) -> tuple:
import shutil
temp_pdf = None
created_tmp_dir = False
# remove spaces, or mineru crash, and _read_output fail too
file_path = Path(filepath)
pdf_file_name = file_path.stem.replace(" ", "") + ".pdf"
pdf_file_path_valid = os.path.join(file_path.parent, pdf_file_name)
if binary:
temp_dir = Path(tempfile.mkdtemp(prefix="mineru_bin_pdf_"))
temp_pdf = temp_dir / pdf_file_name
with open(temp_pdf, "wb") as f:
f.write(binary)
pdf = temp_pdf
self.logger.info(f"[MinerU] Received binary PDF -> {temp_pdf}")
if callback:
callback(0.15, f"[MinerU] Received binary PDF -> {temp_pdf}")
else:
if pdf_file_path_valid != filepath:
self.logger.info(f"[MinerU] Remove all space in file name: {pdf_file_path_valid}")
shutil.move(filepath, pdf_file_path_valid)
pdf = Path(pdf_file_path_valid)
if not pdf.exists():
if callback:
callback(-1, f"[MinerU] PDF not found: {pdf}")
raise FileNotFoundError(f"[MinerU] PDF not found: {pdf}")
if output_dir:
out_dir = Path(output_dir)
out_dir.mkdir(parents=True, exist_ok=True)
else:
out_dir = Path(tempfile.mkdtemp(prefix="mineru_pdf_"))
created_tmp_dir = True
self.logger.info(f"[MinerU] Output directory: {out_dir}")
if callback:
callback(0.15, f"[MinerU] Output directory: {out_dir}")
self.__images__(pdf, zoomin=1)
try:
self._run_mineru(pdf, out_dir, method=method, backend=backend, lang=lang, callback=callback)
outputs = self._read_output(out_dir, pdf.stem, method=method, backend=backend)
self.logger.info(f"[MinerU] Parsed {len(outputs)} blocks from PDF.")
if callback:
callback(0.75, f"[MinerU] Parsed {len(outputs)} blocks from PDF.")
return self._transfer_to_sections(outputs), self._transfer_to_tables(outputs)
finally:
if temp_pdf and temp_pdf.exists():
try:
temp_pdf.unlink()
temp_pdf.parent.rmdir()
except Exception:
pass
if delete_output and created_tmp_dir and out_dir.exists():
try:
shutil.rmtree(out_dir)
except Exception:
pass
if __name__ == "__main__":
parser = MinerUParser("mineru")
print("MinerU available:", parser.check_installation())
filepath = ""
with open(filepath, "rb") as file:
outputs = parser.parse_pdf(filepath=filepath, binary=file.read())
for output in outputs:
print(output)