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* Fix mark_branch function in Graph class to properly handle visited vertices * Refactor build_and_cache_graph_from_db function in utils.py to simplify code and remove unnecessary parameter * Fix retrieval of graph from cache in retrieve_vertices_order function * Fix possible_id type annotation in get_id_from_search_string function * Refactor APIRequest class to improve variable naming and remove unnecessary underscore prefix in headers parameter * Refactor buildVertices function in buildUtils.ts to improve code readability and remove unnecessary variable assignment * Fix API endpoints in test_endpoints.py to use correct HTTP methods